Search results for "methods [Protein Interaction Mapping]"
showing 10 items of 252 documents
Towards events ontology based on data sensors network for viticulture domain
2018
International audience; Wine Cloud project is the first "Big Data" platform on the french viticulture value chain. The aim of this platform is to provide a complete traceability of the life cycle of the wine, from the wine-grower to the consumer. In particular, Wine Cloud may qualify as an agricultural decision platform that will be used for vine life cycle management in order to predict the occurrence of major risks (vine diseases, grape vine pests, physiological risks, fermentation stoppage, oxidation of vine, etc...). Also to make wine production more rational by offering winegrower a set of recommendation regarding their strategy's of production development. The proposed platform "Wine …
A computational method for studying the relation between alternative splicing and DNA methylation.
2015
Alternative splicing is an important mechanism in eukaryotes that expands the transcriptome and proteome significantly. It plays an important role in a number of biological processes. Understanding its regulation is hence an important challenge. Recently, increasing evidence has been collected that supports an involvement of intragenic DNA methylation in the regulation of alternative splicing. The exact mechanisms of regulation, however, are largely unknown, and speculated to be complex: different methylation profiles might exist, each of which could be associated with a different regulation mechanism. We present a computational technique that is able to determine such stable methylation pa…
NOseq: amplicon sequencing evaluation method for RNA m6A sites after chemical deamination
2020
Abstract Methods for the detection of m6A by RNA-Seq technologies are increasingly sought after. We here present NOseq, a method to detect m6A residues in defined amplicons by virtue of their resistance to chemical deamination, effected by nitrous acid. Partial deamination in NOseq affects all exocyclic amino groups present in nucleobases and thus also changes sequence information. The method uses a mapping algorithm specifically adapted to the sequence degeneration caused by deamination events. Thus, m6A sites with partial modification levels of ∼50% were detected in defined amplicons, and this threshold can be lowered to ∼10% by combination with m6A immunoprecipitation. NOseq faithfully d…
iGEMS: an integrated model for identification of alternative exon usage events.
2016
Abstract DNA microarrays and RNAseq are complementary methods for studying RNA molecules. Current computational methods to determine alternative exon usage (AEU) using such data require impractical visual inspection and still yield high false-positive rates. Integrated Gene and Exon Model of Splicing (iGEMS) adapts a gene-level residuals model with a gene size adjusted false discovery rate and exon-level analysis to circumvent these limitations. iGEMS was applied to two new DNA microarray datasets, including the high coverage Human Transcriptome Arrays 2.0 and performance was validated using RT-qPCR. First, AEU was studied in adipocytes treated with (n = 9) or without (n = 8) the anti-diabe…
Human voice pitch measures are robust across a variety of speech recordings: methodological and theoretical implications
2021
Fundamental frequency ( f o ), perceived as voice pitch, is the most sexually dimorphic, perceptually salient and intensively studied voice parameter in human nonverbal communication. Thousands of studies have linked human f o to biological and social speaker traits and life outcomes, from reproductive to economic. Critically, researchers have used myriad speech stimuli to measure f o and infer its functional relevance, from individual vowels to longer bouts of spontaneous speech. Here, we acoustically analysed f o in nearly 1000 affectively neutral speech utterances (vowels, words, counting, greetings, read paragraphs and free spontaneous speech) produced by the same 154 men and women, ag…
Contour integration with corners.
2016
Contour integration refers to the ability of the visual system to bind disjoint local elements into coherent global shapes. In cluttered images containing randomly oriented elements a contour becomes salient when its elements are coaligned with a smooth global trajectory, as described by the Gestalt law of good continuation. Abrupt changes of curvature strongly diminish contour salience. Here we show that by inserting local corner elements at points of angular discontinuity, a jagged contour becomes as salient as a straight one. We report results from detection experiments for contours with and without corner elements which indicate their psychophysical equivalence. This presents a challeng…
Diagnostic performance of gadobenate dimeglumine enhanced MR angiography of the iliofemoral and calf arteries: a large-scale multicenter trial
2007
OBJECTIVE. The purpose of this study was to compare gadobenate dimeglumine–enhanced MR angiography and unenhanced time-of-flight MR angiography for the detection of significant peripheral arterial occlusive disease using digital subtraction angiography as our reference standard. SUBJECTS AND METHODS. Two hundred seventy-two patients underwent MR angiography and digital subtraction angiography of the iliofemoral arteries. MR angiography was performed before (2D time-of-flight acquisitions) and after (spoiled gradient-echo acquisitions) the administration of 0.1 mmol/kg of gadobenate dimeglumine at 1–2 mL/s. Contrast-enhanced MR angiography and digital subtraction angiography of the calf arte…
Démarche statistique pour la sélection des indicateurs par Random Forests pour la surveillance de la qualité des sols
2013
The volume of data, and the large number of biological variables to be tested (one hundred), require analytical techniques, such asRandom Forests, which can overcome the problem of multi-colinearity for the selection of indicators, sensitive to various factors.Random Forests methodology is appropriate for the selection of the most discriminant variables. So, we searched for the best wayto select them, by bringing together all biological variables, representing the Microflora and Fauna. This approach focuses on impactindicators from the Bio2 program, indicators of flora and indicators of accumulation (snails) were not included.This work has been implemented on the three factors of discrimina…
Simulazione numerica tridimensionale del campi de moto indotti dal vento
2006
Nell’articolo viene proposto un modello numerico tridimensionale al volume finiti, che viene utilizzato per la simulazione di campi di moto indotti dal mento in corpi idrici con batimetria complessa. I risultati numerici sono confrontati con misure sperimentali. Al fine di verificare gli effetti sul calcolo del campi idrodinamici di alcume ipotesi simplificative, relative alla distribuzione verticale della pressione e degli sforzi di Reynolds, sono stati quindi condotti alcuni test numerici, dai quali si è evidenziato che l’ipotesi di distribuzione idrostatica delle pressioni, cui si fa ricorso nelle approssinazioni di tipo “quasi-3D”, può essere utilizzata per il carcolo del profili vertic…
The role of fire within Neolithic collective burials: Spatial analyses of cremains from the site of La Truie Pendue, France
2016
International audience; The use of collective graves is one of the main features of the western European Late Neolithic. A single gravesite received the successive deposition of dozens or sometimes hundreds of individuals. While cremations or even full-fired inhumation layers are often found within these funerary deposits, the actual role of fire is still poorly understood. Recently discovered within the important archaeological complex of Passy (Yonne, France), the burned collective grave of La Truie-Pendue provides an outstanding case study to examine the use of fire within Neolithic funerary rites. In this study, we develop a new contextual approach to bone alterations in order to recons…